2011-2015年间年发表SCI论文651篇。其中高影响因子论文（包括评论）23篇，累计影响因子2418，被引用4222次，有5篇高水平论文被Nature Review Microbiology和LANCET等著名杂志专文评述。有14篇论文，年引用率超过10次。在LANCET、PNAS、AUTOPHAGY、PLOS PATHOGEN、ELIFE、CID、EID等一流杂志，发表了一系列具有创新性发现的论文。
1. Cixiu Li, Mang Shi, JunhuaTian, Xiandan Lin, Yanjun Kang, Liangjun Chen, Xincheng Qin, JianguoXu, Edward C Holmes, Yongzhen Zhang. Unprecedented RNA virus diversity in arthropods reveals the ancestry of negative-sense RNA viruses. Elife. 2015, 4: e05378.
2. WenpingGuo, Xiandan Lin, Wen Wang, JunhuaTian, Meili Cong, Hailin Zhang, Miaoruo Wang, Runhong Zhou, Jianbo Wang, Minghui Li, JianguoXu, Edward C. Holmes, Yongzhen Zhang. Phylogeny and Origins of Hantaviruses Harbored by Bats, Insectivores, and Rodents. PLoSPathog. 2013, 9(2): e1003159.
3. ZhongweiJia, Yurong Mao, Fujie Zhang, YuhuaRuan, Ye Ma, Jian Li, Wei Guo, Enwu Liu, Zhihui Dou, Yan Zhao, Lu Wang, Qianqian Li, PeiyanXie, Houlin Tang, Jing Han, Xia Jin, Juan Xu, Ran Xiong, Decai Zhao, Ping Li, Xia Wang, Liyan Wang, Qianqian Qing, Zhengwei Ding, Ray Y Chen, Zhongfu Liu, Yiming Shao. Antiretroviral therapy to prevent HIV transmission in serodiscordant couples in China (2003–11): a national observational cohort study. Lancet. 2013, 382(9899): 1195-203.
4. Yongzhen Zhang, Yongwen He, Yongan Dai, YanwenXiong, Han Zheng, Dunjin Zhou, Juan Li, Qiangzheng Sun, XuelianLuo, Yuli Cheng, Xincheng Qin, JunhuaTian, Xiaoping Chen, Bin Yu, Dong Jin, WenpingGuo, Wei Li, Wen Wang, JinsongPeng, Guobin Zhang, Shaomin Zhang, Xiaomin Chen, Yan Wang, Minghui Li, Zhenjun Li, Shan Lu, Changyun Ye, Menno D. de Jong, JianguoXu. Hemorrhagic fever caused by a novel Bunyavirus in China: pathogenesis and correlates of fatal outcome. Clin Infect Dis. 2012, 54(4): 527-33.
5. Yongzhen Zhang, Dunjin Zhou, YanwenXiong, Xiaoping Chen, Yongwen He, Qiangzheng Sun, Bin Yu, Juan Li, Yongan Dai, JunhuaTian, Xincheng Qin, Dong Jin, Zhigang Cui, XuelianLuo, Wei Li, Shan Lu, Wen Wang, JinsongPeng, WenpingGuo, Minghui Li, Zhenjun Li, Shaomin Zhang, Chen Chen, Yan Wang, Menno D. de Jong, JianguoXu. Hemorrhagic fever caused by noveltick-borne Bunyavirus in Huaiyangshan, China. Zhonghua Liu Xing Bing XueZaZhi. 2011, 32(3): 209-20.
6. YongZhen Zhang, Dunjin Zhou, Xincheng Qin, JunhuaTian, YanwenXiong, Jianbo Wang, Xiaoping Chen, DongyaGao, Yongwen He, Dong Jin, Qiangzheng Sun, WenpingGuo, Wen Wang, Bin Yu, Juan Li, Yongan Dai, Wei Li,JinsongPeng, Guobin Zhang, Shaomin Zhang, Xiaomin Chen, Yan Wang, Minghui Li, Xin Lu, Changyun Ye, Menno D. de Jong, JianguoXu. The ecology, genetic diversity, and phylogeny of Huaiyangshan virus in China. J Virol. 2012, 86(5): 2864-8.
7. Xiang He, Hui Xing, YuhuaRuan, Kunxue Hong, Chunlin Cheng, Yuanyuan Hu, RuoleiXin,Jing Wei, Yi Feng, Jenny H. Hsi, Yutaka Takebe,Yiming Shao. A Comprehensive Mapping of HIV-1 Genotypes in Various Risk Groups and Regions across China Based on a Nationwide Molecular Epidemiologic Survey. PLoS One. 2012, 7(10): e47289.
8. Yi Feng, Xiang He, Jenny H. Hsi, Fan Li, Xingguang Li, Quan Wang, YuhuaRuan, Hui Xing, Tommy Tsan-Yuk Lam, Oliver G. Pybus, Yutaka Takebea, Yiming Shao. The rapidly expanding CRF01_AE epidemic in China is driven by multiple lineages of HIV-1 viruses introduced in the 1990s. AIDS. 2013, 27(11): 1793-802.
9. Xiaoling Pan, Hong Liu, Huanyu Wang, Shihong Fu, Haizhou Liu, Hailin Zhang, Minghua Li, XiaoyanGao, Jinglin Wang, Xiaohong Sun, Xinjun Lu, YougangZhai, WeishanMeng, Ying He, Huanqin Wang, Na Han, Bo Wei, Yonggan Wu, Yun Feng, Dujuan Yang, Lihua Wang, Qin Tang, Guoliang Xia, Ichiro Kurane, Simon Rayner, Guodong Liang. Emergence of Genotype I of Japanese Encephalitis Virus as the Dominant Genotype in Asia. J Virol. 2011, 85(19): 9847-53.
10. Peng Su, Youming Li, Hongzhang Li, Jiakun Zhang, Lang Lin, Qunying Wang, FengGuo, ZizhongJi, Jibo Mao, Wuheng Tang, Zhengchao Shi, Wei Shao,Junliang Mao, Xinjian Zhu, Xiaofeng Zhang, Yuefeng Tong, HuiminTu, Mizu Jiang, Zhiyong Wang, Fengzhe Jin, Ningmin Yang, Jianzhong Zhang. Antibiotic Resistance ofHelicobacter PyloriIsolated in the Southeast Coastal Region of China. Helicobacter. 2013, 18(4): 274-9.
11. Shaowei Sang, Bin Chen, Haixia Wu, Zhicong Yang, Biao Di, Lihua Wang, Xiaoyan Tao, Xiaobo Liu, Qiyong Liu. Dengue is still an imported disease in China: a case study in Guangzhou. Infect Genet Evol. 2015, 32: 178-90.
12. Hongtai Zhang, Dongfang Li, Lili Zhao, Joy Fleming, Nan Lin, Ting Wang, Zhangyi Liu, Chuanyou Li, Nicholas Galwey, Jiaoyu Deng, Ying Zhou, Yuanfang Zhu, YunrongGao, Tong Wang, Shihua Wang, Yufen Huang, Ming Wang, QiuZhong, Lin Zhou, Tao Chen, Jie Zhou, Ruifu Yang, Guofeng Zhu, Haiying Hang, Jia Zhang, Fabin Li, Kanglin Wan, Jun Wang, Xianen Zhang, Lijun Bi. Genome sequencing of 161Mycobacterium tuberculosisisolates from China identifies genes and intergenic regions associated with drug resistance. Nat Genet. 2013, 45(10): 1255-60.
13. Liya Zhou, Jianzhong Zhang, Minhu Chen, XiaohuaHou, Zhaoshen Li, Zhiqiang Song, Lihua He, Sanren Lin. A Comparative Study of Sequential Therapy and Standard Triple Therapy forHelicobacter pyloriInfection: A Randomized Multicenter Trial. Am J Gastroenterol. 2014, 109(4): 535-41.
14. YueTian, Huaimin Wang, Ye Liu, Lina Mao, Wenwen Chen, Zhening Zhu, Wenwen Liu, WenfuZheng, Yuyun Zhao, Deling Kong, Zhimou Yang, Wei Zhang, Yiming Shao, Xingyu Jiang. A peptide-based nanofibrous hydrogel as a promising DNA nanovector for optimizing the efficacy of HIV vaccine. Nano Lett. 2014, 14(3): 1439-45.
15. Zhi Liu, Menghua Yang, Gregory L. Peterfreund, Amy M. Tsou, NurSelamoglub, FevziDaldal, ZengtaoZhong, Biao Kan, Jun Zhu.Vibrio choleraeanaerobic induction of virulence gene expression is controlled by thiol-based switches of virulence regulator AphB. PNAS.2011,108(2):810–5. IF:9.737
16. Lei Xu, Qiyong Liu, Leif ChrStige, Tamara Ben Ari, Xiye Fang, Kung-Sik Chan, Shuchun Wang, Nils ChrStenseth, and Zhibin Zhang. Nonlinear effect of climate on plague during the third pandemic in China. PNAS. 2011, 108(25):10214-9. IF:9.737
17. Bin Chen, Qiyong Liu.Dengue fever in China. Lancet. 2015,385:1621.IF:45.217
18. ZhongweiJia, YuhuaRuan, Zuhong Lu. HIV incidence and mortality in China.Lancet. 2015, 385(9977):1510.IF:45.217
19. ZhongweiJia,Yiming Shao. Challenges and opportunities for HIV/AIDS control in China.Lancet. 2012,379(9818):804. IF:39.06
20. JianguoXu, Shan Lu, Haiyin Wang, Chen Chen.Reducing exposure to avian influenza H7N9.Lancet. 2013, 381(9880): 1815-6.IF:39.06
21. ZhongweiJia, Yurong Mao, Fujie Zhang,YuhuaRuan,Ye Ma, Jian Li,Wei Guo,Enwu Liu, Zhihui Dou,Yan Zhao,Lu Wang, Qianqian Li, PeiyanXie,Houlin Tang, Jing Han, Xia Jin,Juan Xu,Ran Xiong, Decai Zhao,Ping Li,Xia Wang,Liyan Wang，Qianqian Qing，Zhengwei Ding，Ray Y Chen，Zhongfu Liu，Yiming Shao.Antiretroviral therapy to prevent HIV transmission in serodiscordant couples in China (2003–11): a national observational cohort study. Lancet. 2013, 382(9899):1195-203.IF:39.06
22. Hongtai Zhang, Dongfang Li, Lili Zhao, Joy Fleming, Nan Lin, Ting Wang, Zhangyi Liu, Chuanyou Li, Nicholas Galwey, Jiaoyu Deng, Ying Zhou, Yuanfang Zhu, YunrongGao, Tong Wang, Shihua Wang, Yufen Huang, Ming Wang, QiuZhong, Lin Zhou, Tao Chen, Jie Zhou, Ruifu Yang, Guofeng Zhu, Haiying Hang, Jia Zhang, Fabin Li, Kanglin Wan, Jun Wang, Xianen Zhang, Lijun Bi.Genome sequencing of 161Mycobacterium tuberculosisisolates from China identifies genes and intergenic regions associated with drug resistance. Nat Genet. 2013,10(1038):2735. IF:35.209
23. JuyiGao , Jianli Tao , Weili Liang, Meng Zhao, Xiaoxia Du, Shan Cui, HaifengDuan, Biao Kan, Xiaodong Su, Zhengfan Jiang. Identification and characterization of phosphodiesterases that specifically degrade 3'3'-cyclic GMP-AMP.Cell Research. 2015, 25:539-50. IF12.413
24. Tamara Ben-Aria, Simon Neerinckx, LydianeAgier, Bernard Cazelles,LeiXu, Zhibin Zhang, Xiye Fang, Shuchun Wang, Qiyong Liu, Nils C Stenseth.Identification of Chinese plague foci from long-term epidemiological data.PNAS. 2012,109(21):8196-201. IF:9.737
25. Menghua Yang,Zhi Liu,Chambers Hughes, Andrew M Stern, Hui Wang, ZengtaoZhong, Biao Kan,William Fenical, Jun Zhu. Bile salt–induced intermolecular disulfide bond formation activatesVibrio choleraevirulence.PNAS. 2013,110(6):2348-53.IF: 9.737
26. Tao Luo,IñakiComas, Dan Luo, Bing Lu, Jie Wu, Lanhai Wei, Chongguang Yang, Qingyun Liu, MingyuGan, Gang Sun, XinShen, Feiying Liu, SebastienGagneux, Jian Mei, RushuLan, Kanglin Wan, QianGao.Southern East Asian origin and coexpansion ofMycobacterium tuberculosisBeijing family with Han Chinese.PNAS. 2015, 112 (26): 8136–41. IF:9.674
27. Yongzhen Zhang, Yongwen He, Yongan Dai, YanwenXiong, Han Zheng, Dunjin Zhou, Juan Li, Qiangzheng Sun, XuelianLuo, Yuli Cheng, Xincheng Qin, JunhuaTian, Xiaoping Chen, Bin Yu, Dong Jin, WenpingGuo, Wei Li, Wen Wang, JinsongPeng, Guobin Zhang, Shaomin Zhang, Xiaomin Chen, Yan Wang, Minghui Li, Zhenjun Li, Shan Lu, Changyun Ye, Menno D. de Jong, JianguoXu. Hemorrhagic fever caused by a novel Bunyavirus in China: pathogenesis and correlates of fatal outcome. Clin Infect Dis. 2012, 54(4): 527-533.IF: 9.374
28. Lingjie Liao, Hui Xing, Yonghui Dong, Guangming Qin, Yanling Ma, Hongyan Lu, Lin Chen, LanZhang,Connie Osborne, Nicole Seguy, Daying Wei, Feng Sun, Juan Yang, YuhuaRuan, and Yiming Shao. Surveys of Transmitted HIV Drug Resistance in 7 Geographic Regions in China, 2008–2009. Clinical Infectious Diseases.2012,54(S4):S320–3.IF:9.374
29. Venkatesan A, Tunkel AR, Bloch KC, Lauring AS, Sejvar J, Bitnun A, Stahl JP, Mailles A, Drebot M, Rupprecht CE, Yoder J, Cope JR, Wilson MR, Whitley RJ, Sullivan J, Granerod J, Jones C, Eastwood K, Ward KN, Durrheim DN, Solbrig MV, Guodong L, Glaser CA, International Encephalitis Consortium.Case definitions, diagnostic algorithms, and priorities in encephalitis: consensus statement of the international encephalitis consortium.Clin Infect Dis. 2013, 57(8):1114-28. IF:9.374
30. RongzhangHao, Yewu Zhang, Peng Li, Yong Wang, ShaofuQiu, Zhenjun Li, Ligui Wang, Zhihao Wu, Rui Lin, Nan Liu, Guang Yang, Chaojie Yang, John D. Klena, Hongbin Song. Occupational distribution and prevalence of influenza, china, 2008-2012.Clin Infect Dis. 2013,57(5):776-8. IF:9.374
31. Cixiu Li, Mang Shi, JunhuaTian, Xiandan Lin, Yanjun Kang, Liangjun Chen, Xincheng Qin, JianguoXu, Edward C Holmes, Yongzhen Zhang. Unprecedented RNA virus diversity in arthropods reveals the ancestry of negative-sense RNA viruses. Elife. 2015; 4: e05378.IF:9.322
32. WenpingGuo, Xiandan Lin, Wen Wang, JunhuaTian, Meili Cong, Hailin Zhang, Miaoruo Wang, Runhong Zhou, Jianbo Wang, Minghui Li, JianguoXu, Edward C Holmes, Yongzhen Zhang. Phylogeny and Origins of Hantaviruses Harbored by Bats，Insectivores，and Rodents. PLoS Pathogens. 2013,9 (2):e1003159. IF:8.136
33. Xiaoping Xiao, Rudian Zhang, Xiaojing Pang, Guodong Liang,Penghua Wang, Gong Cheng.A Neuron-Specific Antiviral Mechanism Prevents Lethal Flaviviral Infection of Mosquitoes. PLoSPathog. 2015, 11(4): e1004848. IF:7.562
34. Xavier Didelot, Bo Pang, Zhemin Zhou, Angela McCann, Peixiang Ni, DongfangLi,MarkAchtman, Biao Kan. The Role of China in the Global Spread of the Current Cholera Pandemic.PLoS Genetics. 2015,11(3):e1005072. IF:7.528
35. Xincheng Qin, Mang Shi, JunhuaTian, Xiandan Lin, DongyaGao, Jinrong He, Jianbo Wang, Cixiu Li, Yanjun Kang, Bin Yu, Dunjin Zhou, JianguoXu, Alexander Plyusnina, Edward C. Holmesa, Yongzhen Zhang.A tick-borne segmented RNA virus contains genome segments derived from unsegmented viral ancestors. PNAS. 2014, 111(18):6744-9.IF: 9.737
36. Qizhi Cao, Xavier Didelot, Zhongbiao Wu, Zongwei Li, Lihua He, Yunsheng Li, Ming Ni, Yuanhai You, Xi Lin, Zhen Li, Yanan Gong, MinqiaoZheng, Minli Zhang, Jie Liu, Weijun Wang, Xiaochen Bo, Daniel Falush, Shengqi Wang, Jianzhong Zhang.Progressive genomic convergence of twoHelicobacter pyloristrains during mixed infection of a patient with chronic gastritis. Gut. 2014,0:1-8. IF: 14.921
37. Yin Xu, Chan Tian, Shao-Bin Wang, Wu-Ling Xie, Yan Guo, Jin Zhang, Qi Shi, Cao Chen, Xiao-Ping Dong. Activation of macroautophagic system in scrapieinfected experimental animals and human genetic prion diseases. Autophagy. 2012, 8:1604-20. IF:12.00
